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(Update: Opus 12.6.3 added the locations to the Replace dialog.)
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Skip Identical already skips all other identical files. (There wouldn't be any point to it otherwise, since Skip skips the current file, and Skip Identical shouldn't be offered for a non-identical file.) If you get additional prompts for identical files it could be due to them being Read Only which can trigger an extra overwrite confirmation (if configured to).
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The dialog should match your system theme/colors, the same as other dialogs in Opus (and most other software)?