If CLEAR is omitted from the command line, Find will assume it to be CLEAR=yes. If multiple Find commands use the same collection, only the results from the last Find command will be shown.
Opus 12 was the same. I think it makes sense. It's rare to went to add the results of one find to another, and can be confusing/misleading if it's done by accident, so you have to explicitly ask for that on the command.
If I remember correctly, a long time ago it may have used the setting in the Find panel if it wasn't specified one way or the other on the command, but that meant command behavior depended on the last thing you did in the Find panel, which wasn't great.
(Why is there still a CLEAR=yes? => It should let you override a Preset that was saved the other way around.)
Ah OK, yes the Duplicate Finder command defaults changed during the private betas. Found the 27th September change:
"Find DUPES" command now defaults to "RECURSE CLEAR UAC=no", consistent with the "Find" command (and what's usually wanted). Note that commands which build-up results over multiple duplicate searches will need changing to use "CLEAR=no"; I'm assuming that's a very rare usage.