I have finally found a recursive commandline tool that actually works and puts out in the correct format! here:
The syntax is like this
md5sum.exe -r file1.ext file2.ext folder*
So the problem is that for a complete folder calculation, you have to add * at the end of the folder name.
So somthing like this in DOpus doesn't work with folders
md5sum.exe -r {allfile$} > check.md5
Is there a way to tell DOpus if it's a folder to add a * to the end? The selection could be a combination of several files and folders.